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Director/Senior Director, Project Management

AtomwiseSan Diego, California, United States | San Francisco BayOnsite

About Atomwise:


Atomwise is a TechBio company leveraging AI/ML to revolutionize small molecule drug discovery. The Atomwise team invented the use of deep learning for structure-based drug design; a core technology of Atomwise’s best-in-class AI discovery and optimization engine, which is differentiated by its ability to find and optimize novel chemical matter. The company’s belief is that structurally novel chemical matter increases the likelihood of developing first-in-class and best-in-class medicines that have the potential to transform patient care.Atomwise has extensively tested its discovery and optimization engine, delivering hit ID success in over 230 academic and collaboration projects-to-date that cover a wide breadth of protein classes and numerous “hard-to-drug” targets.

Atomwise is building a pipeline of small-molecule drug candidates with first-in-class and best-in-class potential in immunology.

Position Summary:


We are seeking a seasoned and dynamic Director/Senior Director of Project Management to lead cross-functional teams in advancing drug discovery programs from early research through IND submission and into early-stage development. This individual will work in close partnership with scientific and functional leaders to drive strategic planning, progress tracking, and clear communication across teams—ensuring alignment with key milestones, corporate objectives, and regulatory requirements.The ideal candidate brings experience in drug development, a proactive approach to problem-solving, manage effective CRO interactions, and the ability to thrive in a dynamic, fast-paced environment.

Key Responsibilities:


  • Lead cross-functional project teams through all phases of drug development, including discovery, IND-enabling studies, regulatory submissions, and early-stage clinical development.
  • Foster high-performing teams and build strong, collaborative relationships with internal stakeholders and CRO partners.
  • Develop and manage detailed project plans encompassing scope, timelines, deliverables, resources, budgets, and risk mitigation strategies.
  • Translate strategic goals into executable project plans, ensuring alignment across functions.
  • Serve as the primary liaison across discovery, preclinical, clinical, regulatory, and CMC teams to ensure seamless coordination and program success.
  • Proactively identify and resolve project-related issues, facilitating timely decision-making and communication.
  • Leverage tools such as Microsoft Project and Excel to monitor progress, report key metrics, and support data-driven decisions.

Qualifications:


  • Bachelor’s or Master’s degree with 10+ years of relevant pharmaceutical project management experience, or a Ph.D. with 6+ years of experience in drug development.
  • Solid understanding of the pharmaceutical development lifecycle, including regulatory milestones.
  • Proven ability to develop and manage integrated, cross-functional project plans.
  • Experience working with finance teams on budget development and tracking.
  • Comfortable operating in a virtual, start-up environment and willing to take on ad-hoc responsibilities as needed.
  • Strong written and verbal communication skills, with an ability to clearly convey complex information to diverse audiences.
  • PMP or equivalent project management certification is preferred.

Atomwise is an equal opportunity employer and strives to foster an inclusive workplace.  We are a TechBio company leveraging AI/ML to revolutionize small-molecule drug discovery, and we know that we need a diverse team to develop medicines that serve diverse populations.  Accordingly, Atomwise does not make any employment decisions (including but not limited to, hiring, compensation, and promotions) on the basis of race, religion, color, national origin, gender, gender identity, sexual orientation, age, veteran status, disability status, or any other characteristics protected by applicable federal, state, and local law.We strongly encourage people of diverse backgrounds and perspectives to apply.Pay range for this role is between $220,000 to $285,000.

Life at Atomwise

Atomwise uses Deep Learning Neural Networks to help discover new medicines. Atomwise achieves the world's best results for new drug hit discovery, binding affinity prediction, and toxicity detection. Atomwise predicts drug candidates for pharmaceutical companies, startups, and research institutions.
Thrive Here & What We Value- Competitive salary, commensurate with experience- Stock compensation plan – coowner of Atomwise- Platinum health, dental, vision benefits for dependents- 401(k) retirement plan with generous company match (up to 4%)- Flexible paid time off, 13 paid holidays, wellness breaks- Health Savings and Flexible Spending Account options- Employee Assistance Program (EAP), Pet Insurance- Funding for professional development and conference attendance- Flexible work schedule- Generous paid parental leave
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